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Biochemistry data

Published Data

On our portal, “Biochemistry” has a broad meaning, including cell- and plasma profiling with, for example, biomarker concentrations in plasma.

General useful data sources

Data available on the European COVID-19 Data Portal

Data available from research groups in Sweden

The list of available data on this Portal was curated manually until February 2022. After February 2022, we instead began to use a script to query the Europe PMC database (making use of their API) in order to locate relevant publications. We only include data from publications about COVID-19/SARS-CoV-2 that BOTH involve at least one author affiliated with a Swedish research institution AND openly share reusable data and/or code. The code used for the query is written in Python and, as with all of our code, it is openly available in GitHub. We welcome others to reuse it and to repurpose it for other pathogens.

The lists of available data may not be exhaustive as the script used to generate it does not search for every possible database/repository. If you find that a dataset is missing, or that the information related to it is incorrect, please get in touch with us

Last updated: 2022-09-23

Publication Available dataset and code
Stebbing J., Sánchez Nievas G., Falcone M., Youhanna S., et al (2022)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciadv.abe4724
Hanke L., Das H., Sheward D. J., Perez Vidakovics L., et al (2022)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-021-27610-z
Sheward D. J., Mandolesi M., Urgard E., Kim C., et al (2021)
Elsevier BV
DOI: 10.1016/j.xcrm.2021.100450
Iravani B., Peter M. G., Arshamian A., Olsson M. J., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-95968-7
Bortz R. H., Florez C., Laudermilch E., Wirchnianski A. S., et al (2021)
American Society for Microbiology
DOI: 10.1128/mSphere.00224-21
Koenig P., Das H., Liu H., Kümmerer B. M., et al (2021)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/science.abe6230
García M., Kokkinou E., Carrasco García A., Parrot T., et al (2021)
Wiley
DOI: 10.1002/cti2.1224
Pang J., Xu F., Aondio G., Li Y., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-021-21085-8
Tian J., Patel N., Haupt R., Zhou H., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-020-20653-8
Kermani N. Z., Song W., Badi Y., Versi A., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12931-020-01605-8
Persson B. D., John L., Rafie K., Strebl M., et al (2020)
Proceedings of the National Academy of Sciences
DOI: 10.1073/pnas.2020732118
Pettke A., Tampere M., Pronk R., Wallner O., et al (2020)
MDPI AG
DOI: 10.3390/v13010037
Pettke A., Tampere M., Pronk R., Wallner O., et al (2020)
MDPI AG
DOI: 10.3390/v13010037
Nyman E., Lindh M., Lövfors W., Simonsson C., et al (2020)
Wiley
DOI: 10.1002/psp4.12568
Tampere M., Pettke A., Salata C., Wallner O., et al (2020)
MDPI AG
DOI: 10.3390/v12121423
Wacker A., Weigand J. E., Akabayov S. R., Altincekic N., et al (2020)
Oxford University Press (OUP)
DOI: 10.1093/nar/gkaa1013
Custódio T. F., Das H., Sheward D. J., Hanke L., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-020-19204-y
Marklund E., Leach S., Axelsson H., Nyström K., et al (2020)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0241104
Ling J., Hickman R. A., Li J., Lu X., et al (2020)
MDPI AG
DOI: 10.3390/v12091026
Hanke L., Vidakovics Perez L., Sheward D. J., Das H., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-020-18174-5
Maucourant C., Filipovic I., Ponzetta A., Aleman S., et al (2020)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciimmunol.abd6832
Dopico X. C., Hanke L., Sheward D. J., Muschiol S., et al (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.07.17.20155937
Kanberg N., Ashton N. J., Andersson L., Yilmaz A., et al (2020)
Ovid Technologies (Wolters Kluwer Health)
DOI: 10.1212/WNL.0000000000010111
Hultström M., von Seth M., Frithiof R. (2020)
Ovid Technologies (Wolters Kluwer Health)
DOI: 10.1097/HJH.0000000000002531