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Health data

Published Data

Data available from Swedish public agencies and large data produces

Data available from research groups in Sweden

The list of available data on this Portal was curated manually until February 2022. After February 2022, we instead began to use a script to query the Europe PMC database (making use of their API) in order to locate relevant publications. We only include data from publications about COVID-19/SARS-CoV-2 that BOTH involve at least one author affiliated with a Swedish research institution AND openly share reusable data and/or code. The code used for the query is written in Python and, as with all of our code, it is openly available in GitHub. We welcome others to reuse it and to repurpose it for other pathogens.

The lists of available data may not be exhaustive as the script used to generate it does not search for every possible database/repository. If you find that a dataset is missing, or that the information related to it is incorrect, please get in touch with us

Last updated: 2022-09-23

Publication Available dataset and code
Morales D. R., Conover M. M., You S. C., Pratt N., et al (2022)
Elsevier BV
DOI: 10.1016/s2589-7500(20)30289-2
Martin S., Heslan C., Jégou G., Eriksson L. A., et al (2022)
Elsevier BV
DOI: 10.1016/j.isci.2021.103185
Lane J. C. E., Weaver J., Kostka K., Duarte-Salles T., et al (2022)
Elsevier BV
DOI: 10.1016/S2665-9913(20)30276-9
Consiglio C. R., Cotugno N., Sardh F., Pou C., et al (2022)
Elsevier BV
DOI: 10.1016/j.cell.2020.09.016
Henry A., Gordillo-Marañón M., Finan C., Schmidt A. F., et al (2022)
Ovid Technologies (Wolters Kluwer Health)
DOI: 10.1161/CIRCULATIONAHA.121.056663
Tsitsiklis A., Osborne C. M., Kamm J., Williamson K., et al (2022)
Elsevier BV
DOI: 10.1016/s2666-5247(21)00304-9
Carapito R., Li R., Helms J., Carapito C., et al (2022)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/scitranslmed.abj7521
Stebbing J., Sánchez Nievas G., Falcone M., Youhanna S., et al (2022)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciadv.abe4724
Cornillet M., Strunz B., Rooyackers O., Ponzetta A., et al (2021)
Wiley
DOI: 10.1002/eji.202149626
Rosén J., Noreland M., Stattin K., Lipcsey M., et al (2021)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0261315#sec018
Nakanishi T., Pigazzini S., Degenhardt F., Cordioli M., et al (2021)
American Society for Clinical Investigation
DOI: 10.1172/JCI152386
Murray B., Kerfoot E., Chen L., Deng J., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41597-021-01071-x
Axfors C., Janiaud P., Schmitt A. M., van’t Hooft J., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12879-021-06829-7
Sheward D. J., Mandolesi M., Urgard E., Kim C., et al (2021)
Elsevier BV
DOI: 10.1016/j.xcrm.2021.100450
Bocci M., Oudenaarden C., Sàenz-Sardà X., Simrén J., et al (2021)
MDPI AG
DOI: 10.3390/ijms222111622
Mahamat-Saleh Y., Fiolet T., Rebeaud M. E., Mulot M., et al (2021)
BMJ
DOI: 10.1136/bmjopen-2021-052777
Deutsch E. W., Omenn G. S., Sun Z., Maes M., et al (2021)
American Chemical Society (ACS)
DOI: 10.1021/acs.jproteome.1c00657
Rivero-García I., Castresana-Aguirre M., Guglielmo L., Guala D., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-99721-y
Dahlen M., Thorbjørnsen H., Sjåstad H., von Heideken Wågert P., et al (2021)
MDPI AG
DOI: 10.3390/ijerph182010680
Conde E., Martínez-Aranda L. M., Sanz G., López de Subijana C., et al (2021)
Frontiers Media SA
DOI: 10.3389/fpsyg.2021.736499
Simnica D., Schultheiß C., Mohme M., Paschold L., et al (2021)
Wiley
DOI: 10.1002/cti2.1340
Beukes E. W., Andersson G., Fagelson M. A., Manchaiah V. (2021)
Elsevier BV
DOI: 10.1016/j.invent.2021.100402
Mäkelä P., Rossow I., Moan I. S., Bye E. K., et al (2021)
Wiley
DOI: 10.1002/mpr.1892
Iravani B., Peter M. G., Arshamian A., Olsson M. J., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-95968-7
Meili K. W., Jonsson H., Lindholm L., Månsdotter A. (2021)
SAGE Publications
DOI: 10.1177/14034948211023633
Altay O., Arif M., Li X., Yang H., et al (2021)
Wiley
DOI: 10.1002/advs.202101222
Elec A. D., Oltean M., Goldis P., Cismaru C., et al (2021)
Elsevier BV
DOI: 10.1016/j.ijid.2021.01.023
Galien S., Hultström M., Lipcsey M., Stattin K., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12959-021-00272-z
Castro Dopico X., Muschiol S., Christian M., Hanke L., et al (2021)
Wiley
DOI: 10.1111/joim.13304
Hosen I., Pakpour A. H., Sakib N., Hussain N., et al (2021)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0251151
Bortz R. H., Florez C., Laudermilch E., Wirchnianski A. S., et al (2021)
American Society for Microbiology
DOI: 10.1128/mSphere.00224-21
Alrawashdeh H. M., Al-Tammemi A. B., Alzawahreh M. K., Al-Tamimi A., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12889-021-10897-4
Rosen J., Noreland M., Stattin K., Lipcsey M., et al (2021)
Research Square Platform LLC
DOI: 10.21203/rs.3.rs-419853/v1
Louca P., Murray B., Klaser K., Graham M. S., et al (2021)
BMJ
DOI: 10.1136/bmjnph-2021-000250
Steele J., Androulakis-Korakakis P., Carlson L., Williams D., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1007/s40279-021-01438-5
Böhm S., Woudenberg T., Chen D., Marosevic D. V., et al (2021)
Cambridge University Press (CUP)
DOI: 10.1017/S0950268821000510
Hothorn T., Bopp M., Günthard H., Keiser O., et al (2021)
BMJ
DOI: 10.1136/bmjopen-2020-042387
Vlachos J., Hertegård E., B. Svaleryd H. (2021)
Proceedings of the National Academy of Sciences
DOI: 10.1073/pnas.2020834118
García M., Kokkinou E., Carrasco García A., Parrot T., et al (2021)
Wiley
DOI: 10.1002/cti2.1224
Hultstrom M., Fromell K., Larsson A., Quaggin S. E., et al (2021)
Cold Spring Harbor Laboratory
DOI: 10.1101/2021.01.13.21249429
Kermani N. Z., Song W., Badi Y., Versi A., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12931-020-01605-8
Maricic T., Nickel O., Aximu-Petri A., Essel E., et al (2020)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0244824
Lane J. C. E., Weaver J., Kostka K., Duarte-Salles T., et al (2020)
Oxford University Press (OUP)
DOI: 10.1093/rheumatology/keaa771
Kennedy B., Martinell M., Hammar U., van Zoest V., et al (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.12.15.20248247
Kirschenbaum D., Imbach L. L., Rushing E. J., Frauenknecht K. B. M., et al (2020)
Wiley
DOI: 10.1111/nan.12677
Dillner J., Elfström K. M., Blomqvist J., Engstrand L., et al (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.12.13.20248122
Jonmarker S., Hollenberg J., Dahlberg M., Stackelberg O., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1186/s13054-020-03375-7
Duchene S., Featherstone L., de Blasio B. F., Holmes E. C., et al (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.11.18.20233767
Lundberg O. H. M., Lengquist M., Spångfors M., Annborn M., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1186/s13054-020-03351-1
Böhmer M. M., Buchholz U., Corman V. M., Hoch M., et al (2020)
Elsevier BV
DOI: 10.1016/S1473-3099(20)30314-5
Bastard P., Rosen L. B., Zhang Q., Michailidis E., et al (2020)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/science.abd4585
Zhang Q., Bastard P., Liu Z., Le Pen J., et al (2020)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/science.abd4570
Marklund E., Leach S., Axelsson H., Nyström K., et al (2020)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0241104
Almskog L. M., Wikman A., Svensson J., Wanecek M., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1007/s11239-020-02312-3
Rudberg A., Havervall S., Månberg A., Jernbom Falk A., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-020-18848-0
Parrot T., Gorin J., Ponzetta A., Maleki K. T., et al (2020)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciimmunol.abe1670
Ling J., Hickman R. A., Li J., Lu X., et al (2020)
MDPI AG
DOI: 10.3390/v12091026
Rodriguez L., Pekkarinen P. T., Lakshmikanth T., Tan Z., et al (2020)
Elsevier BV
DOI: 10.1016/j.xcrm.2020.100078
Susek K. H., Gran C., Ljunggren H., Alici E., et al (2020)
Wiley
DOI: 10.1111/ejh.13502
Maucourant C., Filipovic I., Ponzetta A., Aleman S., et al (2020)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciimmunol.abd6832
Ying K., Zhai R., Pyrkov T. V., Mariotti M., et al (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.08.06.20169854
Dopico X. C., Hanke L., Sheward D. J., Muschiol S., et al (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.07.17.20155937
Bryant P., Elofsson A. (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.07.03.20145649
Virhammar J., Kumlien E., Fällmar D., Frithiof R., et al (2020)
Ovid Technologies (Wolters Kluwer Health)
DOI: 10.1212/wnl.0000000000010250
Qiao X., Xu X., Zi H., Liu G., et al (2020)
Frontiers Media SA
DOI: 10.3389/fmed.2020.00349
Kanberg N., Ashton N. J., Andersson L., Yilmaz A., et al (2020)
Ovid Technologies (Wolters Kluwer Health)
DOI: 10.1212/WNL.0000000000010111
Hultström M., von Seth M., Frithiof R. (2020)
Ovid Technologies (Wolters Kluwer Health)
DOI: 10.1097/HJH.0000000000002531
Jia J. S., Lu X., Yuan Y., Xu G., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1038/s41586-020-2284-y
Gao J., Liu J., Wen H., Liu H., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1186/s12931-020-01363-7
Appelberg S., Gupta S., Svensson Akusjärvi S., Ambikan A. T., et al (2020)
Informa UK Limited
DOI: 10.1080/22221751.2020.1799723
Petrazzuolo A., Le Naour J., Vacchelli E., Gaussem P., et al (2020)
Informa UK Limited
DOI: 10.1080/2162402X.2020.1857112
Lindahl J. F., Hoffman T., Esmaeilzadeh M., Olsen B., et al (2020)
Informa UK Limited
DOI: 10.1080/20008686.2020.1789036