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Public health data

Published Data

General useful data sources

Data available from research groups in Sweden

The list of available data on this Portal was curated manually until February 2022. After February 2022, we instead began to use a script to query the Europe PMC database (making use of their API) in order to locate relevant publications. We only include data from publications about COVID-19/SARS-CoV-2 that BOTH involve at least one author affiliated with a Swedish research institution AND openly share reusable data and/or code. The code used for the query is written in Python and, as with all of our code, it is openly available in GitHub. We welcome others to reuse it and to repurpose it for other pathogens.

The lists of available data may not be exhaustive as the script used to generate it does not search for every possible database/repository. If you find that a dataset is missing, or that the information related to it is incorrect, please get in touch with us

Last updated: 2022-09-23

Publication Available dataset and code
Olofsson T., Vilhelmsson A. (2022)
Elsevier BV
DOI: 10.1016/j.dib.2021.107698
Ehling R. A., Weber C. R., Mason D. M., Friedensohn S., et al (2022)
Elsevier BV
DOI: 10.1016/j.celrep.2021.110242
Rück C., Mataix-Cols D., Malki K., Adler M., et al (2022)
BMJ
DOI: 10.1136/bmjopen-2021-049302
Wang J., Dalla Barba F., Roccon A., Sardina G., et al (2022)
The Royal Society
DOI: 10.1098/rsif.2021.0819
Havervall S., Jernbom Falk A., Klingström J., Ng H., et al (2022)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0262169
Kozielski F., Sele C., Talibov V. O., Lou J., et al (2022)
Royal Society of Chemistry (RSC)
DOI: 10.1039/D1CB00135C
Pimenoff V. N., Elfström M., Conneryd Lundgren K., Klevebro S., et al (2021)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0260453
Mondino E., Di Baldassarre G., Mård J., Ridolfi E., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41597-020-00778-7
Murray B., Kerfoot E., Chen L., Deng J., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41597-021-01071-x
Axfors C., Janiaud P., Schmitt A. M., van’t Hooft J., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12879-021-06829-7
Sheward D. J., Mandolesi M., Urgard E., Kim C., et al (2021)
Elsevier BV
DOI: 10.1016/j.xcrm.2021.100450
Mahamat-Saleh Y., Fiolet T., Rebeaud M. E., Mulot M., et al (2021)
BMJ
DOI: 10.1136/bmjopen-2021-052777
Månsson V., Wall H., Berman A. H., Jayaram-Lindström N., et al (2021)
Frontiers Media SA
DOI: 10.3389/fpsyg.2021.708037
Dahlen M., Thorbjørnsen H., Sjåstad H., von Heideken Wågert P., et al (2021)
MDPI AG
DOI: 10.3390/ijerph182010680
Kapiriri L., Kiwanuka S., Biemba G., Velez C., et al (2021)
Oxford University Press (OUP)
DOI: 10.1093/heapol/czab113
O'Toole Á., Hill V., Pybus O. G., Watts A., et al (2021)
F1000 Research Ltd
DOI: 10.12688/wellcomeopenres.16661.2
Mäkelä P., Rossow I., Moan I. S., Bye E. K., et al (2021)
Wiley
DOI: 10.1002/mpr.1892
Ohrnberger J., Segal A. B., Forchini G., Miraldo M., et al (2021)
Oxford University Press (OUP)
DOI: 10.1093/eurpub/ckab138
Wang K., Goldenberg A., Dorison C. A., Miller J. K., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41562-021-01173-x
Wang K., Goldenberg A., Dorison C. A., Miller J. K., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41562-021-01173-x
Kerr J. R., Schneider C. R., Recchia G., Dryhurst S., et al (2021)
BMJ
DOI: 10.1136/bmjopen-2020-048025
Solís Arce J. S., Warren S. S., Meriggi N. F., Scacco A., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41591-021-01454-y
Recalde M., Roel E., Pistillo A., Sena A. G., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41366-021-00893-4
Razzaq M., Iglesias M. J., Ibrahim-Kosta M., Goumidi L., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-93390-7
Meili K. W., Jonsson H., Lindholm L., Månsdotter A. (2021)
SAGE Publications
DOI: 10.1177/14034948211023633
Altay O., Arif M., Li X., Yang H., et al (2021)
Wiley
DOI: 10.1002/advs.202101222
Lindholt M. F., Jørgensen F., Bor A., Petersen M. B. (2021)
BMJ
DOI: 10.1136/bmjopen-2020-048172
Krambrich J., Akaberi D., Ling J., Hoffman T., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12985-021-01556-6
Mahdi A., Błaszczyk P., Dłotko P., Salvi D., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-88481-4
Mahdi A., Błaszczyk P., Dłotko P., Salvi D., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-88481-4
Louca P., Murray B., Klaser K., Graham M. S., et al (2021)
BMJ
DOI: 10.1136/bmjnph-2021-000250
Axfors C., Schmitt A. M., Janiaud P., van’t Hooft J., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-021-22446-z
Blanco N., Stafford K. A., Lavoie M. C., Brandenburg A., et al (2021)
Cambridge University Press (CUP)
DOI: 10.1017/S0950268821000649
Pakpour A. H., Al Mamun F., Hosen I., Griffiths M. D., et al (2021)
Elsevier BV
DOI: 10.1016/j.dib.2020.106621
Dillner J., Elfström K. M., Blomqvist J., Eklund C., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-84356-w
Snitz K., Honigstein D., Weissgross R., Ravia A., et al (2021)
Cold Spring Harbor Laboratory
DOI: 10.1101/2021.02.18.21251422
Ledberg A. (2021)
Frontiers Media SA
DOI: 10.3389/fpubh.2021.579948
Feldman M., Lacey Krylova V., Farrow P., Donovan L., et al (2021)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0244924
Saguti F., Magnil E., Enache L., Churqui M. P., et al (2021)
Elsevier BV
DOI: 10.1016/j.watres.2020.116620
Björkman A., Engström M., Winblad U., Holmström I. K. (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12912-021-00540-3
Sallam M., Dababseh D., Eid H., Al-Mahzoum K., et al (2021)
MDPI AG
DOI: 10.3390/vaccines9010042
Delavari S., Abolhassani H., Abolnezhadian F., Babaha F., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1007/s10875-020-00928-x
Lundon D. J., Mohamed N., Lantz A., Goltz H. H., et al (2020)
Frontiers Media SA
DOI: 10.3389/fpubh.2020.571364
Duchene S., Featherstone L., de Blasio B. F., Holmes E. C., et al (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.11.18.20233767
Pellert M., Lasser J., Metzler H., Garcia D. (2020)
Frontiers Media SA
DOI: 10.3389/fdata.2020.00032
Burn E., You S. C., Sena A. G., Kostka K., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-020-18849-z
Smyrlaki I., Ekman M., Lentini A., Rufino de Sousa N., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-020-18611-5
Morgantini L. A., Naha U., Wang H., Francavilla S., et al (2020)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0238217