Skip to main content

Pandemic Preparedness Resources

Genomic Pandemic Preparedness Portfolio (G3P) – Nationally scalable genomics portfolio for detection and surveillance of viral outbreaks


PI(s)/Head responsible for the resource:

Valtteri Wirta

Host organisation(s):

Karolinska Institutet

Resource description:

This resource involves three subprojects:

1. Highly parallelised multi-taxonomic profiling of shotgun metagenomic data (taxprofiler)

For more information on Taxprofiler (including information on access, use, and contact), please see the dedicated Taxprofiler.

2. SARS-CoV-2 bioinformatics pipeline – GMS Arctic

For more information on GMS Arctic (including information on access, use, and contact), please see the dedicated GMS Arctic page.

3. SARS-CoV-2 Reporter for visualization of SARS-CoV-2 genome sequence data (SC2reporter)

For more information on SC2reporter (including information on access, use, and contact), please see the dedicated SC2reporter page.

Contact information:

Valtteri Wirta
Director, Clinical Genomics facility
Email: valtteri.wirta@ki.se