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Protein data

Published Data

General useful data sources

Data available on the European COVID-19 Data Portal

Data available from research groups in Sweden

The list of available data on this Portal was curated manually until February 2022. After February 2022, we instead began to use a script to query the Europe PMC database (making use of their API) in order to locate relevant publications. We only include data from publications about COVID-19/SARS-CoV-2 that BOTH involve at least one author affiliated with a Swedish research institution AND openly share reusable data and/or code. The code used for the query is written in Python and, as with all of our code, it is openly available in GitHub. We welcome others to reuse it and to repurpose it for other pathogens.

The lists of available data may not be exhaustive as the script used to generate it does not search for every possible database/repository. If you find that a dataset is missing, or that the information related to it is incorrect, please get in touch with us

Last updated: 2022-09-23

Publication Available dataset and code
Tomić D., Davidović D., Szasz A. M., Rezeli M., et al (2022)
Elsevier BV
DOI: 10.1016/j.imu.2021.100529
Consiglio C. R., Cotugno N., Sardh F., Pou C., et al (2022)
Elsevier BV
DOI: 10.1016/j.cell.2020.09.016
Noske G., Nakamura A., Gawriljuk V., Fernandes R., et al (2022)
Elsevier BV
DOI: 10.1016/j.jmb.2021.167118
Sridhara S., Rai J., Whyms C., Goswami H., et al (2022)
Springer Science and Business Media LLC
DOI: 10.1038/s42003-022-03187-1
Bryant P., Pozzati G., Elofsson A. (2022)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-022-28865-w
Hempel T., Raich L., Olsson S., Azouz N. P., et al (2022)
Royal Society of Chemistry (RSC)
DOI: 10.1039/d0sc05064d
Hanke L., Das H., Sheward D. J., Perez Vidakovics L., et al (2022)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-021-27610-z
Kozielski F., Sele C., Talibov V. O., Lou J., et al (2022)
Royal Society of Chemistry (RSC)
DOI: 10.1039/D1CB00135C
Agback T., Dominguez F., Frolov I., Frolova E. I., et al (2021)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0251834#sec006
Hober A., Tran-Minh K. H., Foley D., McDonald T., et al (2021)
eLife Sciences Publications, Ltd
DOI: 10.7554/eLife.70843
Deutsch E. W., Omenn G. S., Sun Z., Maes M., et al (2021)
American Chemical Society (ACS)
DOI: 10.1021/acs.jproteome.1c00657
Ibrahim M. A. A., Abdelrahman A. H. M., Atia M. A. M., Mohamed T. A., et al (2021)
MDPI AG
DOI: 10.3390/md19070391
Cotugno N., Ruggiero A., Bonfante F., Petrara M. R., et al (2021)
Elsevier BV
DOI: 10.1016/j.celrep.2021.108852
Mehregan A., Pérez-Conesa S., Zhuang Y., Elbahnsi A., et al (2021)
Cold Spring Harbor Laboratory
DOI: 10.1101/2021.05.28.446179
Chen X., Saccon E., Appelberg K. S., Mikaeloff F., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41420-021-00487-z
Messner C. B., Demichev V., Bloomfield N., Yu J. S. L., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41587-021-00860-4
Patel H., Ashton N. J., Dobson R. J. B., Andersson L., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-85877-0
Koenig P., Das H., Liu H., Kümmerer B. M., et al (2021)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/science.abe6230
Persson B. D., John L., Rafie K., Strebl M., et al (2020)
Proceedings of the National Academy of Sciences
DOI: 10.1073/pnas.2020732118
Tampere M., Pettke A., Salata C., Wallner O., et al (2020)
MDPI AG
DOI: 10.3390/v12121423
Custódio T. F., Das H., Sheward D. J., Hanke L., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-020-19204-y
Rogstam A., Nyblom M., Christensen S., Sele C., et al (2020)
MDPI AG
DOI: 10.3390/ijms21197375
Sekine T., Perez-Potti A., Rivera-Ballesteros O., Strålin K., et al (2020)
Elsevier BV
DOI: 10.1016/j.cell.2020.08.017
Parrot T., Gorin J., Ponzetta A., Maleki K. T., et al (2020)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciimmunol.abe1670
Hanke L., Vidakovics Perez L., Sheward D. J., Das H., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-020-18174-5
Rodriguez L., Pekkarinen P. T., Lakshmikanth T., Tan Z., et al (2020)
Elsevier BV
DOI: 10.1016/j.xcrm.2020.100078
Maucourant C., Filipovic I., Ponzetta A., Aleman S., et al (2020)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciimmunol.abd6832
Virhammar J., Kumlien E., Fällmar D., Frithiof R., et al (2020)
Ovid Technologies (Wolters Kluwer Health)
DOI: 10.1212/wnl.0000000000010250
Appelberg S., Gupta S., Svensson Akusjärvi S., Ambikan A. T., et al (2020)
Informa UK Limited
DOI: 10.1080/22221751.2020.1799723